PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn141091
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 326aa    MW: 35229.1 Da    PI: 4.7829
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn141091genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-156199747
                     HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     eEd +++ a++ +G++ W++Ia+ ++ gRt++ +k++w++ 
       Achn141091 61 EEDHIILAAHAIHGNK-WASIAKLLP-GRTDNAIKNHWNST 99
                     9***************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.36935104IPR017930Myb domain
SMARTSM007171.2E-839102IPR001005SANT/Myb domain
CDDcd001676.14E-1142100No hitNo description
SuperFamilySSF466891.2E-1260103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-1860101IPR009057Homeodomain-like
PfamPF002492.3E-136199IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MKEEDLMTDP PFAAADGGDD DGYGDGDGNG GGGFSGSRVK GPWSPEEDAV LSRLPLFAAD  60
EEDHIILAAH AIHGNKWASI AKLLPGRTDN AIKNHWNSTL RRKGMDLKRF KPSPFNTLEE  120
GSLNMTKASL EETLSCGDIN SSKAPMTEEK SLKEKRHNHC EDRPQINEDH QVAEINHPTL  180
SRPVARVGAF SVYNPLSSST SGFPSVRGEP VVPLRCGHGC CEASRGVPSR RSLLGPEFVE  240
YDGPPPFSSH ELAAIATDLS NIAWIRSGLE SSTQVSESTA SQTQGAAEPM DIFEKQNLNN  300
DNFRFELSQM PMPTFALPAE LEGLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mbj_A2e-1760103851MYB PROTO-ONCOGENE PROTEIN
1mbk_A2e-1760103851MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-176010361104C-Myb DNA-Binding Domain
1msf_C6e-176010361104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007009127.12e-94Myb domain protein 25, putative
TrEMBLA0A061FMM32e-94A0A061FMM3_THECC; Myb domain protein 25, putative
STRINGVIT_08s0007g01540.t014e-85(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.17e-53myb domain protein 109